This project contains materials for "Model management and result reproducibility" training at Managing Big Data tutorial on 5th of December 2016 in Potsdam.
The course will also explain how to build an effective Data Management strategy, needed if you apply for funds for a project. The target group of this basic course are young scientists. This one day tutorial will give you insights in standard operation procedures (SOPs), experimental design, modelling design and a short introduction in SEEK. This training will give you an overview and hints how to plan your experiment and generate data which are consistent and valid for mathematical analysis. This training is affiliated to a conference which will take place at December 6. Participation at the conference is free for attendees of this workshop.
Programme: This Project is not associated with a Programme
SEEK ID: https://demo.fairdomhub.org/projects/16
Public web page: http://sb-sciencemanagement.com/training/training/managing-big-data
Organisms: Escherichia coli, Saccharomyces cerevisiae, Bacillus subtilis, Pseudomonas fluorescens
FAIRDOM PALs: No PALs for this Project
Project created: 30th Nov 2016
Related items
- People (5)
- Institutions (1)
- Investigations (2+6)
- Studies (2+5)
- Assays (2+6)
- Data files (4+8)
- Models (0+1)
- Publications (4)
- Presentations (0+7)
- Documents (0+2)
- Sample types (0+1)
Projects: SysMO DB, FAIRDOM training
Institutions: HITS gGmbH
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project ...
Projects: SulfoSys, SysMO DB, Synthetic Biology Manchester Demo, FAIRDOM training
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, School of Computer Science, University of Manchester, Autonomous University of Barcelona, HITS gGmbH
https://orcid.org/0000-0003-2130-0865Expertise: Software Engineering, Data Management, Software Architecture, Repositories
Tools: Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE
Lead Software Engineer and Architect on the FAIRDOM team based in Manchester.
Developing SEEK and RightField.
Projects: SysMO DB, FAIRDOM training
Institutions: HITS gGmbH
Projects: FAIRDOM training
Institutions: HITS gGmbH
Projects: SysMO DB, Synthetic Biology Manchester Demo, FAIRDOM training, A test project
Institutions: School of Computer Science, University of Manchester, Autonomous University of Barcelona, HITS gGmbH, University of Manchester
Expertise: Transcriptomics, Proteomics, Microarray
Tools: Molecular Biology, Transcriptomics, Fermentation
Special guest appearance from Charles Darwin himself!
Describet here is the ivnestigation
Submitter: Guest
Studies: This is the study of the investigation of today
Assays: This is the first assay of the study of the investigation of today
Snapshots: No snapshots
The project aimed to build a virtual tomato fruit that enables the prediction of metabolite levels given genetic and environmental inputs, by an iterative process between laboratories which combine expertise in fruit biology, ecophysiology, theoretical and experimental biochemistry, and biotechnology.
Snapshots: No snapshots
It also is described, but as a study
Submitter: Guest
Investigation: An Investigation Today
Assays: This is the first assay of the study of the investigation of today
Snapshots: No snapshots
About 580 tomato plants were grown in a greenhouse in the southwest of France (Sainte-Livrade sur Lot) during the summer of 2010 according to usual production practices.
Snapshots: No snapshots
Submitter: Guest
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Frim
Study: Frim1
Organisms: No organisms
SOPs: No SOPs
Data files: Frim1 - datapackage and 1 hidden item
Snapshots: No snapshots
It also has a description
Submitter: Guest
Assay type: Transcriptomics
Technology type: Rna-seq
Investigation: An Investigation Today
Organisms: No organisms
SOPs: 2 hidden items
Data files: No Data files
Snapshots: No snapshots
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Abstract (Expand)
Authors: F. A. Meineke, M. Lobe, S. Staubert
Date Published: 22nd Apr 2018
Publication Type: Not specified
PubMed ID: 29677996
Citation: Stud Health Technol Inform. 2018;247:426-430.
Abstract
Authors: Michiel Van Bel, Tim Diels, Emmelien Vancaester, Lukasz Kreft, Alexander Botzki, Yves Van de Peer, Frederik Coppens, Klaas Vandepoele
Date Published: 4th Jan 2018
Publication Type: Tech report
DOI: 10.1093/nar/gkx1002
Citation: Nucleic Acids Research 46(D1):D1190-D1196
Abstract (Expand)
Authors: M. D. Wilkinson, M. Dumontier, I. J. Aalbersberg, G. Appleton, M. Axton, A. Baak, N. Blomberg, J. W. Boiten, L. B. da Silva Santos, P. E. Bourne, J. Bouwman, A. J. Brookes, T. Clark, M. Crosas, I. Dillo, O. Dumon, S. Edmunds, C. T. Evelo, R. Finkers, A. Gonzalez-Beltran, A. J. Gray, P. Groth, C. Goble, J. S. Grethe, J. Heringa, P. A. 't Hoen, R. Hooft, T. Kuhn, R. Kok, J. Kok, S. J. Lusher, M. E. Martone, A. Mons, A. L. Packer, B. Persson, P. Rocca-Serra, M. Roos, R. van Schaik, S. A. Sansone, E. Schultes, T. Sengstag, T. Slater, G. Strawn, M. A. Swertz, M. Thompson, J. van der Lei, E. van Mulligen, J. Velterop, A. Waagmeester, P. Wittenburg, K. Wolstencroft, J. Zhao, B. Mons
Date Published: 16th Mar 2016
Publication Type: Not specified
PubMed ID: 26978244
Citation: Sci Data. 2016 Mar 15;3:160018. doi: 10.1038/sdata.2016.18.
Abstract (Expand)
Author: J. J. Tyson
Date Published: 15th Aug 1991
Publication Type: Not specified
PubMed ID: 1831270
Citation: Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7328-32.