I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
I am a researcher at the Scientific Databases and Visualization Group at Heidelberg Institute for Theoretical Studies (HITS) , one of the developers of SabioRK - System for the Analysis of Biochemical Pathways - Reaction Kinetics (http://sabiork.h-its.org/) . I am working on design and maintenance of the information systems to store, query and analyse systems biology data; definition and implementation of methods for the integration of data from multiple sources. In SySMO-DB project
Disciplines: Not specified
Roles: Sysmo-DB Pal
Expertise: Data integration, Nonlinear Dynamics, Optimal experimental design, Dynamic optimization., bioreactor models, rapid sampling experiments, parameter estimation, dynamics of biological networks, coupling metabolome and environome, Mathematical modelling, Data Management
Process engineer, modeling biological systems since 1985.
PhD student as research associate at the Institute for System Dynamics (ISYS), Universität Stuttgart, Germany. Engineering background→modelling, identification and analyses. Detailed kinetic modelling, identification and analysis of the TCA cycle (tricarboxylic acid cycle, citric acid cycle) and the ETC (electron transport chains, respiratory chains) of Escherichia coli. One of the SysMO-DB pals for SUMO.
Lead Software Engineer and Architect on the FAIRDOM team based in Manchester.
Developing SEEK and RightField.
pISA-tree (Standard Directory Tree) distinguishes two Broad Assay types: wet-Lab (NGS, MicroArray,etc.) and dry-Lab (Models, Statistics, etc)
Biological problem addressed: Gene expression
Investigation: pISA - Test Investigation
Study: pISA - Test Study1
SOPs: No SOPs