Projects: STREAM
Institutions: University of Warwick
Disciplines: Not specified
Roles: Sysmo-DB Pal
Expertise: Comparative Genomics, Data integration, Database and data warehouse design, High-throughput sequence analysis, Phylogenetics, Systems Biology, Bioinformatics, Software Engineering
Tools: BioMart, HTML, XML, EnsEMBL, R, Perl, SBML, Databases
Systems Biologist specialising in data integration, high-throughput sequence analysis and phylogenetics.
Projects: COSMIC
Institutions: University of Stuttgart
Disciplines: Not specified
Roles: Sysmo-DB Pal
Expertise: Data integration, Nonlinear Dynamics, Optimal experimental design, Dynamic optimization., bioreactor models, rapid sampling experiments, parameter estimation, dynamics of biological networks, coupling metabolome and environome, Mathematical modelling, Data Management
Tools: Dynamic modelling, evaluation of process dynamics, continuous cultivation, Material balance based modeling, stimulus response experiments, Matlab, Fermentation, SBML
Process engineer, modeling biological systems since 1985.
Projects: SUMO
Institutions: University of Stuttgart
Disciplines: Modeller
Roles: Sysmo-DB Pal
Expertise: Systems Biology, parameter estimation, Mathematical modelling, Data Management
Tools: Matlab, Mathematica, SBML, ODE
PhD student as research associate at the Institute for System Dynamics (ISYS), Universität Stuttgart, Germany. Engineering background→modelling, identification and analyses. Detailed kinetic modelling, identification and analysis of the TCA cycle (tricarboxylic acid cycle, citric acid cycle) and the ETC (electron transport chains, respiratory chains) of Escherichia coli. One of the SysMO-DB pals for SUMO.
Projects: TRANSLUCENT
Institutions: Humboldt-Universität zu Berlin
Disciplines: Not specified
Roles: Not specified
Expertise: Not specified
Tools: semanticSBML, PHP, MIRIAM, SQL, linux, Python, SBML, Bioinformatics, Data Management
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Projects: SysMO-LAB
Institutions: University of Wageningen
Disciplines: Not specified
Roles: Sysmo-DB Pal
Expertise: dynamics of biological networks, Reactor models, Mathematical modelling, Bioinformatics
Tools: SQL, Material balance based modeling, Matlab, Mathematica, Copasi, JWS Online, ODE, Partial differential equations, Algebraic equations, Linear equations, Metabolomics, Model organisms, SBML, Cell biology, Computational and theoretical biology, Molecular Biology
Projects: KOSMOBAC
Institutions: Max-Planck-Institute Magdeburg
Disciplines: Not specified
Roles: Sysmo-DB Pal
Expertise: dynamics and control of biological networks, parameter estimation, Mathematical modelling
Tools: DIVA, ProMOT, differential algebraic equations, Matlab, ODE, SBML
This model is for a paper that examines whether the in vivo behavior of yeast glycolysis can be understood in terms of the in vitro kinetic properties of the constituent enzymes. In non-growing, anaerobic, compressed Saccharomyces cerevisiae the values of the kinetic parameters of most glycolytic enzymes were determined. For the other enzymes appropriate literature values were collected. By inserting these values into a kinetic model for glycolysis, fluxes and metabolites were calculated. Under
...
Creator: Stuart Owen
Contributor: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Saccharomyces cerevisiae
Investigations: Growth control of the eukaryote cell: a systems...
Studies: Can yeast glycolysis be understood in terms of ...
Modelling analyses: Glycolysis in Saccharomyces cerevisiae
Abstract (Expand)
Authors: Falko Krause, Uhlendorf Jannis,Lubitz Timo,Schulz Marvin,Klipp Edda,Liebermeister Wolfram
Date Published: 17th Nov 2009
Journal: Bioinformatics
PubMed ID: 19933161
Citation:
Scales: Not specified